Publications Algomics

  1. Tardif M, Atteia A, Specht M, Cogne G, Rolland N, Brugière S, Hippler H, Ferro M, Bruley C, Peltier G, Vallon O, Cournac L (2013). PREDALGO, a new subcellular localization prediction tool dedicated to green algae. Mol. Biol. Evol. 29(12):3625–3639
  2. Hiroko Takahashi, Sophie Clowez, Francis-André Wollman, Olivier Vallon & Fabrice Rappaport (2013). Cyclic electron flow is redox-controlled but independent of state transition. Nature Communications 4:1954
  3. Hoa Mai Nguyen, Stéphan Cuiné, Audrey Beyly-Adriano, Bertrand Légeret, Emmanuelle Billon, Pascaline Auroy, Fred Beisson, Gilles Peltier, and Yonghua Li-Beisson (2013). The Green Microalga Chlamydomonas reinhardtii Has a Single w-3 Fatty Acid Desaturase That Localizes to the Chloroplast and Impacts Both Plastidic and Extraplastidic Membrane Lipids. Plant Physiology, Vol. 163, pp. 914–928
  4. Xenie Johnson and Jean Alric (2013). Central Carbon Metabolism and Electron Transport in Chlamydomonas reinhardtii: Metabolic Constraints for Carbon Partitioning between Oil and Starch. Eukaryotic Cell 12(6):776
  5. Frédérique Courant, Arnaud Martzolff, Graziella Rabin, Jean-Philippe Antignac, Bruno Le Bizec, Patrick Giraudeau, Illa Tea, Serge Akoka, Aurélie Couzinet, Guillaume Cogne, Dominique Grizeau, Olivier Gonçalves (2013). How metabolomics can contribute to bio-processes: a proof of concept study for biomarkers discovery in the context of nitrogen-starved microalgae grown in photobioreactors. Metabolomics DOI 10.1007/s11306-013-0532-y
  6. Patrick Giraudeau, Edern Cahoreau, Stphane Massou, Meerakhan Pathan, Jean-Charles Portais, and Serge Akoka (2012). UFJCOSY: A Fast 3D NMR Method for Measuring Isotopic Enrichments in Complex Samples. ChemPhysChem, 13, 3098 – 3101
  7. Edern Cahoreau, Lindsay Peyriga, Jane Hubert, Frédéric Bringaud, Stéphane Massou, Jean-Charles Portais (2012). Isotopic profiling of 13C-labeled biological samples by two-dimensional heteronuclear J-resolved nuclear magnetic resonance spectroscopy. Analytical Biochemistry 427, 158–163
  8. Xenie Johnson and Jean Alric (2012). Interaction between Starch Breakdown, Acetate Assimilation, and Photosynthetic Cyclic Electron Flow in Chlamydomonas reinhardtii. J. Biol. Chem. , 287:26445-26452
  9. Laurence Meslet-Cladière and Olivier Vallon (2012). A new method to identify flanking sequence tags in chlamydomonas using 3’-RACE. Plant Methods, 8:21
  10. A. Martzolff, E. Cahoreau, G. Cogne, L. Peyriga, J.-C. Portais, E. Dechandol, F. Legrand, S. Massou, O. Gonçalves, J. Pruvost, J. Legrand (2012). Photobioreactor design for isotopic non-stationary 13C-metabolic flux analysis (INST 13C-MFA) under photoautotrophic conditions. Biotechnology and Bioengineering, Vol. 109, No. 12
  11. Marco Rügen, Alexander Bockmayr, Jack Legrand, Guillaume Cogne (2012). Network reduction in metabolic pathway analysis: Elucidation of the key pathways involved in the photoautotrophic growth of the green alga Chlamydomonas reinhardtii. Metabolic Engineering, 14(2012)458–467
  12. Cogne G, Rügen M, Bockmayr A, Titica M, Dussap C-G, Cornet J-F, Legrand J (2011). A model-based method for investigating bioenergetic processes in autotrophically growing eukaryotic microalgae: application to the green alga Chlamydomonas reinhardtii. Biotechnology Progress 27, 631-640
  13. Giraudeau P, Massou M, Robin Y, Cahoreau E, Portais JC, Akoka S (2011) Ultrafast quantitative 2D NMR: an efficient tool for the measurement of specific isotopic enrichments in complex biological mixtures. Analyt. Chem. 83:3112-3119
  14. Johnson X (2011) Manipulating RuBisCO accumulation in the green alga, Chlamydomonas reinhardtii. Plant Mol Biol. 76, 397-405
  15. Meslet-Cladiere, L., Vallon O. (2011) Novel Shuttle Markers for Nuclear Transformation of the Green Alga Chlamydomonas reinhardtii. Eukaryotic Cell, Dec. 2011, p. 1670–1678
  16. Nguyen M, Baudet M, Cuiné S, Adriano JM, Barthe B, Billon E, Bruley C, Beisson F, Peltier G, Ferro M, Li-Beisson Y (2011) Proteomic profiling of oil-bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: with focus on proteins involved in lipid metabolism. Proteomics 11, 4266-4273
  17. Siaut M, Cuiné S, Cagnon C, Fessler B, Nguyen M, Carrier P, Beyly A, Beisson F, Triantaphylides C, Li-Beisson Y, Peltier G. (2011) Oil accumulation in the model green alga Chlamydomonas reinhardtii: characterization, variability between common laboratory strains and relationship with starch reserves. BMC Biotechnol. 11, 7
  18. Tolleter, D, Ghysels, B. Alric, J., Petroutsos, D., Tolstygina, I., Krawietz, D., Happe, T., Auroy, P., Adriano, J.M., Beyly, A., Cuiné, S., Plet, J. Reiter, I.M., Genty, B., Cournac, L., Hippler, M. & Peltier, G. (2011) Control of hydrogen photo-production by the proton gradient generated by cyclic electron flow in Chlamydomonas reinhardtii. Plant Cell
  19. Houille-Vernes L, Rappaport F, Wollman FA, Alric J, Johnson X (2011) Plastid Terminal Oxidase 2 (PTOX2) is the major oxidase involved in chlororespiration in Chlamydomonas. Proc Natl Acad Sci USA, 108(51):20820-5
  20. Chochois V, Constans L, Dauvillée D, Beyly A, Solivérès M, Ball S, Peltier G, Cournac L (2010) Relationships between PSII-independent hydrogen bioproduction and starch metabolism as evidenced from isolation of starch catabolism mutants in the green alga Chlamydomonas reinhardtii. Int J Hydrogen Energy 35, 10731-10740
  21. Peltier G, Tolleter D, Billon E, Cournac L (2010) Auxiliary electron transport pathways in chloroplasts of microalgae. Photosynth Res 106, 19-31
  22. Johnson X, Houille-Vernes L, Alric J (2010) Commentary: Screening and studying photosynthetic mutants: basics and beyond. Bioenergetics, 239-244
  23. Johnson X, Vandystadt G, Bujaldon S, Wollman F-A, Dubois R, Roussel P, Alric J, Béal D (2009) A new setup for in vivo fluorescence imaging of photosynthetic activity. Photosynth Res, 102, 85-93